PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_01343 (677 amino acids)

SeqID: H281DRAFT_01343 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597208: methylcrotonyl-CoA carboxylase, alpha-subunit (biotin-containing)[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_01343
MFNKILIANRGEIACRVAATCKRLGIASVAVYSDADADAKHVSACDEAVHIGGATAAESY
LRVARIIEAARATGAQAVHPGYGFLSENEDFAHACEAAGIVFIGPPVEAIAAMGSKAAAK
ALMHAAAVPLVPGYHGDDQNPELLHREADAIGYPVLLKASAGGGGKGMRVVERSEDFLAA
LASCKREAASSFGNDRVLIEKYLTRPRHVEVQVFADRHGGAVYLFDRDCSVQRRHQKVLE
EAPAPGLSAQIKREMGEAAVAAARAVNYVGAGTVEFIMTATGDFYFMEMNTRLQVEHPVT
EMITGQDLVEWQLRVAAGQPLPLTQDQLKIDGHAIEARIYAEHPARGFLPSTGTLKHLRM
PEGVEFAIHAGAGESRKAPVRIDSGVREGDTITPFYDPMIAKLIVHGATREEALARMSRA
LHACEVVGPHTNVEFLQRIVESEPFATGDLDTGLIERHHEALFAPVKKPFKEALALACAA
LLTREGGTAHGASPWDALSHWRLNSGFTQTLGWLAIESSGETGSPFTVAFARDGATQTLE
HDGVREAFSWSSGAGLHEYRATIGDARATGRVFIDGDTFHVFCLGHALAFEWQNLLAHAA
DAEHGEGRLTAPMPGKVIAVLVEPGAVVEKGTPLIVMEAMKMEHTIGAPAAGTVSEVLYA
VGDQVADGAQLLVLDVQ