PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_01376 (368 amino acids)

SeqID: H281DRAFT_01376 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595990: hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_01376
MPSRTQTRIPCMMIRGGTSKGAFFMASDLPAEPAERDRVLLAVMGSPDPRQIDGIGGADP
LTSKVAIISPSSREDADVDYLFAQVVVNEARVDFGQNCGNILAGVGPYAIERGLVNAEDG
STRVAIHMVNTGQIAVATVRTPGCRVTYEGDARIDGVPGGAAPIPLEFRDTAGSTCGALL
PTGRLKDTVEGVELTCIDNGMPLVLMRARDLQRTGYETREELDADNELKARIEKIRLVVG
PMMNLGDVSARTVPKMCLVAEPRNGGTISTRSFIPHRCHASIGVLGAVSVATAAVLPGTV
CDGIAKVELEGARKRVSVEHPTGEFTVELTLGGEPERPEVLSAALLRTARWLFDGVVGIP
SSVWEPQV