PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_01451 (415 amino acids)

SeqID: H281DRAFT_01451 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            CytoplasmicMembrane           [matched PS00449: ATPASE_A Pattern - Cytoplasmic Membrane]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 731052: sn-glycerol-3-phosphate transport ATP-binding protein ugpC]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_01451
MTYVVKQANTLASPLTGAADMTESADTARTDNMPGVADTADTAHAANVAVRNLTIRLGGN
TVIENLDLDVQPGEFVVLLGPSGCGKSTLLHSIAGLIDVTDGSIEIAGEDMTWADPKDRR
IALVFQSYALYPTMSVERNLSFALRINGTPKAEIARRVARAAEMLQLGPLLKRKPAQLSG
GQRQRVAIGRAIVREADVFLFDEPLSNLDAKLRTELRRELKQLHQRLGATMIYVTHDQVE
AMMLATRMAVMRGGAIQQFGTPAEVYARPANLFVATFLGTPAMNLVNGTLEQRDGALHFC
TEQWRLDVSNYAFVDRSGESQPQSQPQSPPRPCVLGVRAEDVRIGPTQGEGAGEHAKISL
VEPMGNHRVVWLDYHGVQIASIDQSKTPVMPGDTLAFSLDSTHVSLFDAASGARL