PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_01667 (409 amino acids)

SeqID: H281DRAFT_01667 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2632690: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_01667
MYEFTAPFQDPSGSPIRELFKYLAEPGMISFAGGYPASDLFDVDGLASAQKRAYRNSNRC
LQYGPTDGLPELKSELVNLMARRGVTCEPGELLVTTGSQQGLDLLLRVLVAPGDVVVTEQ
PAYPATLQALKLQHAQIVTAQVDGHGIDVENLAAHLESGAVPRPKLLYTVPTFANPTGAT
ITRERRIELLKLAVKYRFVIVEDDPYGDLRFSGDTVPSILALTAEVEGSRDWVVHFASLS
KIVAPGVRVGWSIAPAEITRRCVIAKQTVDLCSAPWTQAIAAEYLADGALERHLPRITTT
YRRKCDALCNELRWQLDDAIQFHQPEGGMFVWARIEGIDSSELLWHAIENKVIFVPGKAF
FADKLDVASLRLSFAAPGVEEIQEGARRLKRAYEAALAAGTSSVQSSGS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory