PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_01671 (1184 amino acids)

SeqID: H281DRAFT_01671 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_01671
MNNPVIEVETAPTSEVSLDDKYRKERGYAYMSGSHALIRVMINQRIRDNDAGLNTAGFVS
GYRGSPLAGFDTALWSAEAVLKQHQIKFLPAINEDLAATAVWGTQQLALFPQESTVEGVF
SMWYGKGPGVDRSGDALKHGNGAGTSALGGVLVAAADDHTAKSSTFGHQSEQALIAAFIP
VLYPASVQDYLDFGVLGIAMGRYSGLWIGLKCVSDVIETSAVADVDPHRIDIRLPDKEFA
ADDDLHIRSPDVWAEQEPRIVRKRLPAALAFCRANRLNSIRIKGPKSKLGIMCAGKAYND
VMEALRLLGLSDDDIEKNGLAVLKIGMVWPLDPTILRDFAAGLDELLVVEEKRPIIEQQI
KDELYSDALNGLPLVRVSGKGSGAIGGEWNRSGEACLLRSDYELTPVEVAGAIVARLRAQ
AGWTETRKREIEARLAALEAVGRVQAVAGAIRKPFFCSGCPHNTSTRVPEGSRATAGIGC
HYMASSMDRRTESYTHMGGEGVPWVAQAQFSTRKHIFANIGDGTYFHSGSLAIRQAVAAR
VSMTFKILYNDAAAMTGGQPVDGELTVDGITRQVAAEGVRRIAVVSDDIEQYRISGTTFA
AGTTVHDRSELDAVQRNLRDYEGVSVLVYDQTCASEKRRRRKKGTYPDPAKRVAINSEVC
EGCGDCSVQSNCLSVEPLDTPLGRKRQINQSSCNKDFSCVQGFCPSFVSVEGGKLRSSQT
KKSPEAMMADWPELPYPASPAMTDTVDILINGVGGTGVVTIGNLLGMAAHLEGRGCTVLD
MAGLAQKGGAVWSHVRLASKRERMYASRIPSGSADVIIGCDLVVTAAPDTLSRIRKGKTR
VVINGQTSPTSAFVANRDWQLPEAELKSHVESVCGDDFVDWVDAQEIARRHLGDTVFSNA
IMLGFVWQQGLIPLARESIERAIELNGQAVKKNKLAFQIGRWLAVNPARFAAGEEVESVI
VWRQKKKVVLDELIQSRVSLLAAYQSERYAREYETFVSEITAQVGSHGKREAFILAVAEG
LYKLMAYKDEYEVARLYSLPGFKKSLENQFEGDFKIRYYLAPPMLSRKNEKGELIKKEFG
PWLGHVFPLLARLKILRGTPFDPFGHTAERRRERALIREYRLWIRTALTHLADKPDVCIE
LAKLPDSIRGYGHVKERAIDEVMAKRDTLLAALSAPAHQWRASA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory