PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_01715 (553 amino acids)

SeqID: H281DRAFT_01715 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [11 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 84027906: Putative sulfate transporter ychM]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_01715
MREMLEPQSTKSSPMIGRGDIFGGVAAGVVALPLALAFGVASGLGPVAGLYGAIVTGIVA
ALFGGTPVQITGPTGPMTLVVAGVLAANMHSSGSANLPLVVGIFVVAGFMQIAFGLLRIG
SYIRYVPYPVISGFMSGIGVIIITQQVFPMFGANAPGSDPWSILSQLHLLGGNIKWSAVA
LSASTIAIALLLPRFTKVIPASLVALIVLTITAVMLKLDVPVIGEIPSGLPTLTMPAFDL
HRLPSLVPAALQLSLLGAIDSLLTALVADNLTRTRHDSNRELIGQGLGNIAAAVIGGLPG
AGATMRTVVNVDAGGRTRLSGVIHGLFLAAVLLGLSGLLQHVPRAILAGLLVTVGIGIID
RRSFRHLLKLSRSDAFLMLLVLALTVFTDLIIAVATGLVVASFVFVKKVGDITEQRTMLT
PVADEPWADELTIPAGLRDRLLIKHVDGPIFFGFASKFLDIARQATLLSRLLVLRMDRIS
YMDQTGVYALDDALVRLNAAGVRVLVVGVSVSQRDLLERLQVIPAVVPERDIFNNFDELR
KALPVIIGDLHAK