PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_01977 (854 amino acids)

SeqID: H281DRAFT_01977 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1172699: Phosphoenolpyruvate-protein phosphotransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_01977
MSHSEGHIVLLAPMTGPVVPLANVPDPVFSGGMFGDGIGVDPLEGRLVAPCEGTVTHLAR
TGHAVTLATAEGAEILLHIGIDTVELNGKGFAPMIEQGAHVHAGDVLIEFDQDQIALHAP
SLVSVIAIANSDAFEIVERAQGGMLKAGETPLLLLRPRDGAAADASRQLSATSVTEEARA
QVTLVHAGGLHARPAARAREAARGFDARVEVRYEGRKAAIESVVGLLGLGAGQGATVELL
GVGPQARAAVDAIADELTREAHGEVEEKPARQSSPAPQTVAPAAGETLAPNTLAGVCASP
GVAIGKLVCWDDADIDPPEQASGTSAAESRLLDKAIATVDTDLGTTVRDASQRGAVGEAG
IFAVHRVLLEDPTLLDAARDLISLGKSAGFAWREAIRAQIAILTNIEDALLAERAADLRD
IEKRVLRALGYTNAAARALPDEAVLAAEEFTPSDLSALDRSRVTALVMARGGATSHAAIL
ARQAGIPALVAMGDALYAIPEGTQVVVNATTGRLEFAPTELDVERARLERSRLAGVREAN
RRTSQEAAVTADGRAIEVAANIATLDDAKTAVENGADSVGLLRTELLFIHRAAAPTTDEH
RQSYQGIVDALSGRTAIIRTLDVGADKEVDYLTLPPEPNPALGLRGIRLAQVRPDLLDDQ
LRGLLSVKPFGAVRILLPMVTDVGELIRIRKRIDEFARELGRTEPIEVGVMIEVPSAALL
ADQLSQHADFLSIGTNDLTQYTLAMDRCQADLAAQSDGLHPAVLRLIAATVQGASKHGKW
VGVCGALAGDPLAMPLLVGLGVTELSVDPVSVPGIKARVRNLDYQLCRQRAQDALALESA
QAVRAVSRETWPLD

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory