PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_02173 (343 amino acids)

SeqID: H281DRAFT_02173 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 732294: ABC transporter periplasmic-binding protein ytfQ precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_02173
MALLNKEARRNARTQKIRPLAGSLLALAVGLGAGLGAIAAHAEDALPKLPGKTPLKVGFA
QTESNNPWRLAETRSFKEVAAKCGWQLVMTDANGSNSKQVSDIQSMIAQHVDLLVFPPRE
EKPLAPVVLQAKKAGIPVILVDRNVDQSVAVAGRDYITFIGSDFIDQGHRAADWLVKATG
GKAKIIELEGTTGASAANDRKKGFDEIIAKNPGMTIIASQSGDFARDKGRQVMETLLQAH
PDVTAVYAHNDEMALGAIAAIKAAGKQPGKDIQIVTIDGTKGGLDAIAAGELGASVQSSP
FFGPLACDVAQRYAKGEKIPTWVKVSDRFYDKSNVQQSMQYGY