PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_02182 (795 amino acids)

SeqID: H281DRAFT_02182 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_02182
MNAPETHSLIGASVERKEDYRFLTGNGQYTDDILLPQQTYAVFLRSPHAHAKINSIDTTA
AKQSPGVVAIFTGADMAAENVGGLPCGWLIHSTDGKPMNEPPHPIIAHTKVRHVGDQVAL
VIADSIKAAKDAAELIEVDYDVLPAVVDTAHAADAGQPAVHDEVPDNVCYNWGHGDKAAT
DAAFAKAAHVTTLDIVNNRLVPNAIEPRAVNASYSSQDDSYTLYVANQNPHVERLLMAAF
VLSLPESKLRVIAPDVGGGFGSKIFLYAEDVALTWASKKIRRPVKWTAERSEAFLSDAHG
RDHVTKAELAMDADGKFLAMRIHTIANMGAYLSTFASSVPTILYATLLAGQYATPAIYAE
VKAVFTNTVPVDAYRGAGRPEATYVVERLVETAAREMKLDPAEIRRRNFIREFPYATPVG
LTYDTGDYETILARSLELADVKGFEARRQESERNGKRRGLGYSCYIEACGLAPSNIAGAL
GARAGLFEVGQIRVHPTGSVTVFTGSHSHGQGHETTFAQVVADRLGLPLESVEIVHGDTG
RIPFGMGTYGSRSIAVGGSAIMKALDKIETKAKKIAAHLLEAATEDIEFKDGVFRVAGTD
RTKAFAEISLAAYVPHNYPLDVLEPGLEESAFYDPSNFTYPSGAYICEVEVDPDTGVCRI
QRFTAVDDFGNVINPMIVEGQVHGGLGQGIGQAMLERCVYDNESGQLLSGSYMDYAMPHA
SDLPDFTVETAKGTPCTHNPLGVKGCGEAGAIGSPPAVINAIIDALAPLGVTDLQMPATP
HRVWSAIHAVKQAAH