PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_02374 (570 amino acids)

SeqID: H281DRAFT_02374 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 416604: Alcohol dehydrogenase [acceptor]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Cytoplasmic            0.15
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
  Final Prediction:
    CytoplasmicMembrane    9.82

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_02374
MSNAQAASSGRRLEGEFDYIIVGAGTAGCVLANRLTEDPDVQVLLLEAGGKDDYHWIHVP
VGYLYCIGNPRTDWLYKTQAEPGLNGRALSYPRGRVLGGSSSINGMIYMRGQREDYDEWA
RVTNDASWSWNSVLPVFKRSEDHHSGESESHGAGGPWRVEKQRLKWKILEEFSKAAQETG
IPATDDFNRGDNTGVGYFDVNQKRGIRWNASKAFLRPAMKRNNLTVITGAHTQRVVFDGR
RCTGVEYRGNETEYFAKARCEVILSSGAVNSPQLLELSGIGNGARLQNLGIDVVNDLRGV
GENLQDHLQLRMAYQVDGVRTLNTASAHWWGKLMIGVQYALFQSGPMSMSPSQLGAFAKS
DPDDRSLTRPDLEYHVQPLSLDRFGEPLHRFNAFTASVCQLRPTSRGSIHIESTDAAAPP
LIAPNYLSTDYDRHVASNALRLTRRIAAAPALARYQPREILPGIEYQTEEELQRAAGLVG
TTIFHPVGTCRMGTTDDPGAVVDNRLRVIGVDGLRVVDASVMPTITSGNTNSPTLMIAER
ASDMIREDRRARVAGSLAAHAGQAVSMSAV