PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_02383 (594 amino acids)

SeqID: H281DRAFT_02383 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [8 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 7404442: Ribose import ATP-binding protein rbsA]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_02383
MKRIMKNKFFWLFLVVLFALPVLPQPIHVPEYWVTLLNYIGLYSIVAIGLVLLTGIGGMT
SFGQAAFVGIGAYATAYLTTRFGVSPWLALIAGVLVTALIALILGLVTMRLSGHFLPLGT
IAWGLSLFYLFGNLEMLGKYDGINGIPVLNVFGIDLESGRHIYYLIWLVVLGAVVSVQNL
LNSRPGRAIRALRGGGMMAEAMGVNTAWMRVVIFVYAAVLASVSGFLYAHLQRAVNPTPF
GLNHGIEFLFMAVVGGVSHVWGAVLGAAILTVLQDYLQTLLPKLLGENGNFEVIVFGILM
VLLLQYARQGVWPFVARFFPRGPRAHPPDQAEALPQRSKPTGGENLLTVNKARKQFGGLV
AVNDVSFEVKAGQIIGLIGPNGAGKSTTFNLVTGVLQATSGEITFRGERIDALSSREIVK
RGIGRTFQHVKLLPGMTVLENVAIGAHLRGHAGVWRSIVRLNSVEEARLMAEAARQIRRV
GLEQHMYDEAGSLALGQQRILEIARALCCDPTLLLLDEPAAGLRYQEKLQLADLLRRLKA
EGMSVLLVEHDMDFVMNLTDRLVVMEFGTRIAEGLPQEVQQDPAVLEAYLGGVE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory