PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_02398 (576 amino acids)

SeqID: H281DRAFT_02398 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_02398
MATQVSGEGAIIEPKDGLSYVRGSTEIPLSEATIGEFLRRTAERFPDRPAVVFREQQIRW
TWKEFAEEVDILAAGFLALGIVKGDRVGIWSPNRVEWLLTQFATARIGAVLVNINPAYRL
AELEYALNKVGCKAIVAAERFKTSMYLEMLQQLAPELATHAPGDLHAARLPDLRYVIRMC
DTETPGMLTFSDVIEQGRATLDVAKLDEIGATLSCHEAINIQFTSGTTGNPKGATLTHSN
VVNNARYIAMAMNLSEQDALCIPVPLYHCFGMVLAVLACVSVGANMVFPGEAFDPAATLA
AVAQEQCTALHGVPTMFIAELDHPDFASFDLSRLRTGIMAGSPCPIETMKKVVSRMHLNE
ITIAYGMTETSPVSFQSSTTDPLDKRTTTVGRIQPHLEVKIVDPVGDIVPVSETGELCTR
GYSVMQGYWDDEPKTRESIVDGWMHTGDLATLDAEGYCNIVGRLKDMLIRGGENIYPREI
EEFLFRHPKIQSVQVFGVPDSRYGEEVCAWVVLRPGEQATAEEIQQFCNGQIAHYKVPKY
IRFVDELPMTVTGKVQKFVMRERMISELKLQEGKTA