PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_02404 (1312 amino acids)

SeqID: H281DRAFT_02404 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 20141685: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_02404
MASTTLGVKVDDLLRSRLRDAATRLERTPHWLIKQAIFAYLEKIEQGQLPPELSGVAGSA
DMADGASVEPDEDGAAHPFLDFAQNVQPQSVLRAAITAAYRRPEPECVPFLLGQARLPAN
LAGDVQALAAKLVETLRGKSKGGGVEGLIHEFSLSSQEGVALMCLAEALLRIPDRATRDA
LIRDKISKGDWKSHVGQAPSLFVNAATWGLMITGKLVTTNSETNLSSALTRLIGKGGEPL
IRKGVDMAMRLMGEQFVTGENISEALANSRKYEARGFRYSYDMLGEAATTEADAQRYYAS
YEQAIHAIGKAAGGRGIYEGPGISIKLSALHPRYSRSQQERTMSELLPRVRSLAILARRY
DIGLNIDAEEADRLEISLDLLEALCFDPELAGWNGIGFVVQAYQKRCPFVIEYIVDLARR
SRHRIMVRLVKGAYWDTEIKRAQVDGLEGYPVYTRKIYTDVSYLACAKKLLGAPDAVYPQ
FATHNAHTLSAIYHLAGNNYYPGQYEFQCLHGMGEPLYEEVTGPLSAGKLNRPCRVYAPV
GTHETLLAYLVRRLLENGANTSFVNRIADENVAIQDLIADPVEEASKIVPLGAPHAKIPL
PRNLYGAERLNSMGLDLSNEHRLASLSSALLASANHPWRAAPMLADDQIVLGNARDVRNP
ADHRDLVGTVVEASAEHVSAALAHAVAAAPIWQATPVEARADCLARAADLLEAQMHTLMG
LVVREAGKSLANAVSEIREAIDFLRYYSTQIRSEFSNDTHRPLGPVVCISPWNFPLAIFM
GQVAAALAAGNTVLAKPAEQTPLIAAQAVRILREAGVPAGAVQLLPGDGETVGAALVADP
RTRAVMFTGSTEVARLINKTLSGRLDPEGKPIPLIAETGGQNAMIVDSSALAEQVVADVM
QSSFDSAGQRCSALRVLCLQDDVADRTLEMLTGAMRELTVGNPDRLSTDVGPVIDVDAKR
GIDAHIAAMREKGRKVEQLPMPEGCAQGTFVPPTLIELDSIDELKREVFGPVLHVVRYRR
SQLDQLLEQIRTTGYGLTLGIHTRIDETIAHVISRAHVGNIYVNRNVIGAVVGVQPFGGE
GLSGTGPKAGGALYLQRLLATRPAGLPKSLAQALIVDVPQAAEKGDNPSAALTALRDWLI
AEREPQLAARCDGYLSHMPAGATAVLSGPTGERNTYTLGARGTVLCIASTASGARAQFAA
VLATGNRALFEGAAGEQLVTQLPASLKSYASVRKNAETPFDAVLFEGDSDELLTLVKEVA
KRPGPIVSVQGVASRALESGDEDYALERLLTERSVSVNTAAAGGNANLMTIG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory