PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_02676 (788 amino acids)

SeqID: H281DRAFT_02676 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_02676
MEISDLKGAPTDQRYIGKRVTRTEDKKLLQGQGSYVDDVHLPNMLQAAVLRSSHAHAKIV
SIDCTAARELKGVHAVYTHADLSGRARGRAPSMLPNPAIRFERTQELLASTEVTFAGEAV
AFVVADNRYIAEDACGLIEVEYDTLPAVADCRDGLRPESPLCHTDAKDNVVAHIEMGFGD
IDAAFNGAPHVVEETYWQNRGSAHPMETRGYLAEFHAANGELTVWSSGQAPHHEKKNLVE
LLEWDAEKLRVLMNDVGGGFGPKLPFYPEEALVAIAAVALKRPVKWIEDRREHFLAVTQE
RDQWWTVKIALENDGKIRGVKLEMVHDNGAFLPWGIITPYISITTTPGPYVIPAMGAKLD
VVYTNKCATSPVRGAGRPQAVFAMERILDKAARALGMDRAELRWRNLIQPEQMPYDAGFI
YRDGSPLRYDSGDYPACQKAALERAKYSSFAQRKAEARREGRFIGIGMASFVEGTGMGPF
EGATVRVQANGRIAVITGASPQGQGHKTTFAQICAEQLNVPLETIDVITGDTGGISMGVG
TFASRVTVNAGNSVYIAAQAVGEKMLTLTAHLWKCKPEELLLVEGHVARRAGIEQRMSYG
QLAKISQGMPGFTMPEGLTAGLEETKYFSPAQSTYCNGTAVVELEVDRETGHITILNYVM
AHDSGKLINPMIVDGQVIGSVAHGIGNATLEWMQYDENAQPITTNFGEYLLPMATDVPNI
DIVHLETPSPLNPLGVKGAGEGGTIPAAAAIVAAIEDALSEYGVEFTEAPLVPQRVFQKL
KEAGAYAR