PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_02776 (554 amino acids)

SeqID: H281DRAFT_02776 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 129005: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_02776
MLNDLWYKNAIVYCLSVGTFMDANGDGVGDFQGLLRRLDYLQGLGVTTIWLMPFQPSPGR
DNGYDISDYYNVDPKYGTLGDFSEFTHACRERGLRVMIDLVVNHTSDQHPWFREARSDPD
SQYRDWYVWSDKQPPNAKDGVVFPGVQKSTWTFDKQAKRWYFHRFYEFQPDLNTANPYVR
AELLKIMGFWIQLGVSGFRMDAVPFVIATKGPKVREPVEQYDMLREFREFLQWRQGDAII
LAEANVLPDTDLEYFGDEGERLQMMFNFQLNQNTFYALATGDTAPLKKALTATRPRPATA
QWGVFLRNHDELDLGRLTPEQREAVFAAFAPEPDMQLYERGIRRRLAPMLAGDRRRLELA
YSLMLTLPGTPVFRYGDEIGMGDDLRLPERECARTPMQWSTEPEGGFTKHAKPPCRVITG
GAYGFERVNVASQRRDPNSFLNWMERMIRMRREVPEISWGDFDVLRTSRSDVLALRFDWR
NNSVLCLHNFGAEACTVKFRSGCNEPGQNRLINLLSDEHSEEQDDGRHAVVLEPYGYRWY
RVGGLDYLLRRSEI