PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_02853 (564 amino acids)

SeqID: H281DRAFT_02853 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15597612: periplasmic trehalase precursor[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_02853
MIVSSQARSISRAGNVSGVPGVLVQPSLPAARLKYLHRAVAVSGFAFLVGLSSVCRADTQ
VGGTLPPAPDILYGDLFVAVQTAQIYPDQKTFVDATPNADPAVIVQLYQQQRGKPGFSLA
NFVNQYFTPPSEPVITPPANQTLREHINWLWPALTRTTTSAPPNSSLIPLPKPYVVPGGR
FREGYYWDTYFTMLGLQEAGREDLVDNMLDNFAYMIDTFGHIPNGNRTYYLDRSQPPFFS
HMVELAAKVEGHGVYQKYLPALRKEYGYWMQGEKSTPAGSATRNVVVMPDRTVLNRYWDE
LDTPRDESYLEDIQTAQKATGRNPNDVYRELRATAESGWDFSSRWFGDNMTLATVRTTSI
IPVDLNSLMFHLEISIAKGCSETRDFRCVGEFAGRAAKRALGINRYLWNPNGYYGDYDWQ
LAKPRDNKTAAMVFPLFVGAAWPERAQKTAQQVQSTLLQPGGLATTTYNTTQQWDAPNGW
APLHWVAIQGLKRYGHDALAQQIGTRFLTDVKGVYASDKKLVEKYVVEGAGTGGGGGGEY
PLQDGFGWTNGVTLKLLDLYSPGE