PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_03214 (627 amino acids)

SeqID: H281DRAFT_03214 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 126951: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_03214
MQRSIATVSISGTLVEKLTAIQAAGFEGVEIFENDLLYFDGSPADVRRIAEDLGLKIMLF
QPFRDFDGVSPERLARNLDRAKRKFDVMHELGTDRILVCSNVSPDTICDDALMTDQLGAL
AEAAEAAGVVAGYEALAWGRHVKTYRHAWKLVNAVNHRNLGLVLDSFHTLSLNDAVDAIA
DIPGERIAFVQIADAPKLAMDVLEWSRHYRCFPGQGDFDVANFTAQVVKTGYKGPLSLEI
FNDGFRAAPTNITAADGHRSLLFLEEQTRALLQAARQPVGELYESPAAPAHVGYQFLEFA
VDDTTRAHLADWLGKLRFRQAGQHRSKDVTLYQHGAASIVLNAEPDSFANAFFQQHGLSL
CASAFRVNDANQAFERAAGFGYAPFSGQIGPNERVLPAVQAPDGSLNYFVDETPDQPTLF
EADFVLTDVNGPFEVGPLTRIDHVCLAVPANSLDTWVLFLRTAFGFQAEPGVLVPDPYGL
VRSRALRSRDGSVRVVLNASVDHHTAVAEALHTYHGSGLNHVAFSTSDIFSAIPEFVADG
LPVLRIPRNYYEDLAARYELPDDMLEALREHNILYDRDERGGEFFHAYTEQLDQRFFMEI
VERRGGYDGYGASNAAVRLAAQAQRRK