PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_03229 (661 amino acids)

SeqID: H281DRAFT_03229 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_03229
MRLGVCYYPEHWPESMWEDDARRMKALGIEQVRIAEFAWSRIEPTPGEYDWAWLDRAIEV
LGAAGLQVVMCTPTATPPKWLIDRHPDILPIGADGRPRAFGSRRHYDFSSPSYFSASQKI
CTAIAERYGKHPAVAYWQTDNEFGCHHTVVSYSPAAVARFREWLKARYTTIDELNRAWGT
VFWSMEYRSFDEIDAPVATVTEAHPSHRLDYRRFASDEVARYNRMQVEIIRAHSPGRPVA
HNFMQLFTEFDHYKVAADLDVAAWDSYPLGALEEQWFAPDVKARWLRSGHPDFASFNHDV
YRGMSKLPFWVMEQQPGPVNWAQWNPAPLPGMVRLWSWEAFAHGAGCVSYFRWRQAPFAQ
EQMHAGLNTPDNRLDVGGSEAAQVASEIRTVLAANAHADAAVRSKVALVYDYEAKWLFEI
HPQGADFHYPRFAFEYYSALRALGLDVDVVPVDASLDGYSLIVVPPLPVVPADLAARLAS
SGAQVVLGPRTGSKTQDLQIPANLPPGALADVLPLRVWRVESMRPNVTEAVRLAGTQDAS
VEDGVARHWRDFIESKDTNSFDVLARFADGQPAYVRSGAFHYLASLFDDALTTRLFEQIA
QRAGVETVRLGESVRISRCGALTYVFNYGDNAHTITGAADNAFVIGSSTVEPQGVAVYRA
G

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory