PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_03364 (407 amino acids)

SeqID: H281DRAFT_03364 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 21542067: Formyl-coenzyme A transferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_03364
MDKKQVGPLSGYRILDLTVMTAGPVGTVLLADLGADVVKVEEPMAGDLSRKLGNQFVQGE
SVQFLSQNRNKRSIRLDLKSPKGRDAFLRMAEQADVVVENFRPGTVDRLGIGYAAVKARN
PKIVYASVSAFGQSGPYAAWPANDPIVQAVAGLMDMTGEAGGNPVRLGAPLPDFGAAALL
AFGISAALLHRERHGEGQRIDTSLLSAALFSTIPRDGETLRSGKAPERLGSGHPTMVPYR
NYQGSDGRYFFAACFTEKFWQNLCRALGREELLSDERFIGNTARTANRHALDVILEEQFL
LHTAEYWVAHLSAADVPCAIVQDYHTALTQDPQISHNHAVVEIEHPVAGRVTNIASPVNF
HGSPVAYRRPPPTLGQHTAEVLAEYGFGEEEIAALEGRELAAAGAKS