PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_03380 (515 amino acids)

SeqID: H281DRAFT_03380 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 132119: Ribose import ATP-binding protein rbsA]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Cytoplasmic            0.01
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_03380
LTEATTQRRPGREPDVPAPREILQLKGVSKRFPGVVALDGIDLDLRSGEVHAVCGENGAG
KSTLMKIISGQYHADDGVICYEGKPVQFASTSDAQAAGIAIIHQELNLVPHLSVAENIYL
AREPKRGPFVDYRTLNANAQRCLQRIGLNVSPTTLVGALSIAQQQMVEIAKALSLDARVL
IMDEPTSSLTESETVQLFRIIRELRADGVAILYISHRLDEMAEIVDRVTVLRDGRHIATS
DFASTTINEIVARMVGRALDDAYPPRESVPTEQVLMRVRDLQRTDTFGPLSFDLRKGEIL
GFAGLMGAGRTEVARAIFGAERLDSGSIQLGDTPVTIRSPREAIRHGIAYLSEDRKKDGL
ALSMPVAANITLSNVRAISSRGFLRFSEETAIAERYVRELAIRTPTVKQIARNLSGGNQQ
KIVISKWLYRGSRILFFDEPTRGIDVGAKYAIYKLMDRLAADGVGVVLISSELPELLGMT
DRIAVFHEGLITAVLETRQTSQEEILHYASGRSHA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory