PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_03644 (499 amino acids)

SeqID: H281DRAFT_03644 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 20141685: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_03644
MTDMTHFDTSLVPTGDIFIGGEWRQGRGNPYKSLYPADQSVNMEISTANADDAREAVEAA
DIAWRKSDWSGLKPHQRALILYRIADLIMARHEALAQLQRRDNGKPIGETRVLVASAANT
FRYFAACLETLDEEVTPSRGDYLTMSVYEPIGVIAAITPWNSPIASDAQKLAPALAGGNA
VVLKPAEVTPLVSLALARICEEAGVPKGVISVLPGKGSVIGDVLVRHPLVKKVSFTGGTE
VGRGIARIAADKLMPVSLELGGKSPTVVFDDADLDHAVNGVLYGIFSSSGEACIAGSRLF
VQRSVYDAFMKRLVEGARKLRVGDPSRVETQMGPLITQAHRETVERYVALGLEEGGRLLC
GGERPVGDGREQGTYFQPTILEGLSNNARICQEEIFGPVLVAMPFDDEASLLKEANNSVF
GLAAGIWTRDYKRAYRTARALEAGTIWINTYKLFSISTPFSGWKESGMGREKGRLGIREY
MQQKSLYWGLNDAPLAWAN