PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_03828 (429 amino acids)

SeqID: H281DRAFT_03828 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 76363851: Hexuronate transporter]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_03828
MQTAVLGLARTASRYRWTVCALLFFATVINYMDRQILGLLAPLLQHDIGWSQVQYGRIVI
AFSAFYAVGLLCFGRIVDWLGTRISYALAMLIWSIAAMLHAAVGSVTGFAMVRALLGIGE
GGNFPAAIKTTAEWFPRRERALATGIFNSGANIGAVFAPAIIPPLALAFGWRSAFVIIGA
LGIVWLAVWFAFYRSAEPRSHDDDLEEARDEVEALDAANANARAPGWGVLIRKRQTWAFL
IGKFLTDPVWWFYLFWLPKWLNESRGMDMQHIGLPLVCIYAMTTVGSIGGGWLSSALLRA
GWSVNAARKTAMFICACCVLPIAFVSQVDNLWGAVAIVGLAAAAHQGWSANLFTTASDLF
PKRALGAVVGIGGMAGSIGGVLFSEVIGQVLQRTGHYWVLFAIGALAYLIAFAVMHMLTP
RMAPAKFEA