PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_03840 (1199 amino acids)

SeqID: H281DRAFT_03840 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598087: geranyl-CoA carboxylase, alpha-subunit (biotin-containing)[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_03840
MFEKILIANRGAIACRILRTLRELNVTGVSVFSEADRASRHVSEAPIAHELGDGPAAMTY
LDSTKILEIARCEGVQAIHPGYGFLSENAAFGEACEAAGIAFIGPTPAQLRAFGLKHTAR
EIAGEQGVPMLNGTGLLEDLPAALNAAESIGYPVMLKSTAGGGGIGMRVCWHADELSAHF
DAVKRLGENNFSDSGVFLEKYIERARHLEVQVFGDGKGDAIALGVRDCSVQRRNQKVLEE
TPAPCLPEGIAQALCDAAVKLAKAVDYRSAGTVEFVYDSTAQQFYFLEVNTRLQVEHGVT
EQVWGVDLVRWMIELAAGTLAPLNELAASLTPRGHAIQARLYAEDPGRDFIPSPGLLTHV
AFPQADGSALRIDTWIESGCEVPPYFDPMLAKIIAWSPTREEARHALNDALQNTRIFGVE
TNRDYLRQILDDEPFASGEPWTRCLEGLKYRASTIEVVSGGTQTTVQDFPGRQGFWAVGI
PPSGPMDDRAMRLGNRLLGNAPEAAALEITMSGPTLRFNTDAVIAITGAEIPVLLDDVTQ
PLNTSVYVRAGSVLALGTIRGAGARAYLCVRGGLDVALYLGSRSTFTLGQFGGHGGRAVR
AGDVLHLYPLQDTQAGAALSNVPTLESVRTIRVIYGPHGAPEYFSARYIEQFLDTEWEIH
FNSSRTGVRLIGPKPEWAREDGGEAGLHPSNIHDNPYAVGAVDFTGDMPVILGPDGPSLG
GFVCPVTIIEADLWHIGQLKAGDKVRFVPVEIGHAREAARERIRELESLAITQCAPVERR
SSLTSPIVLDSGAADERLVARLSGDTHLLLEIGPPELDLVSRFRGHALMQALEAKALPGV
IDLTPGIRSLQIHYRPEDLSLAQLLGIVGEAWEQVLLMKDLRVPSRVVHIPLSWDDPACQ
LAIEKYMTTVRKDAPWCPSNLEFIRRINDLESIDAVRRIVFDANYLVMGLGDVYLGAPVA
TPLDPRHRLVTTKYNPARTWTAENSVGIGGAYLCVYGMEGPGGYQFVGRTLQMWNRYRKV
ADFAGQPYLLRFFDQIRFYEVSSEELLRIRADFPLGRYPLRIEESELSLPDYQAFLASES
ASIEEFRSRQQAAFEAERERWREAGTSEEAIEAPVAEDAQLAPLEDGEVSVDSEIAGSLW
QVKVKPGDVVAADDILLIIESMKMEISVCAPCAGTVGEIYVGPGSPVRAGQRIAVIERH