PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_03879 (399 amino acids)

SeqID: H281DRAFT_03879 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [10 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 84029538: Xylose transport system permease protein xylH]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_03879
MTPDVTSQRADDTVPRGAFGGSQRIQQLFARYKILALLIAVAAIWIFFSVLTHGAFVTPR
NLSNLLRQMSITGMLACGMVFVIIAGEIDLSVGSLLGLLGGVAAILDVNRHWPIGVTLPV
VMLLGVLVGVFNGWWSTYRRVPSFIVGLGGMLAYRGILLGVTGGSTIAPVSDGFVFVGQG
YLPTLAGDTLAVVLFVLLAFLTLRQRRNRERYQLSVVPVWQDVAKVIGAGVILAGFVATL
DRYGGIPVPVLLLLALLGIFTWIATQTVFGRRIYAVGSNLEATRLSGVNTNRVKLAIFAL
MGLMCAFAGIVNTARLAAGSPSAGSMGELDAIAACFIGGTSMRGGSGTVYGALIGALVMA
SLDNGMSMLDVDAYWQMIVKGSILVLAVWIDVVSGSNRR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory