PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_03906 (344 amino acids)

SeqID: H281DRAFT_03906 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 121397: Glutamine transport ATP-binding protein glnQ]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_03906
MIEIRNISQRFAGPRGWVEALHNVNLSIPAGEVFGIIGRSGAGKSTLVRTINLLTRPTEG
NIVVDGRDLTTLPAAQLREARREIGMIFQHFNLLSSRTVYENVALPLELAGMKRDEIEAH
VLPLLELVGLSAQKDRYPAQISGGQKQRVGIARALASKPKVLLSDEATSALDPETTRAIL
ELLKRINRELNLTIVLITHQMDVIKQVCDRVAVLDAGRVVEEGKVIDVFLQPHHEVTRAL
IGDVIAQELPPAMKARVAERLKTGSGHLLRLAFTGSGVDQPILSETIRRYELDFNILHGQ
IDEIQGQAFGSLAVLAGGEPTKVAQALTYLREQGVVVEELSYVE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory