PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_03922 (434 amino acids)

SeqID: H281DRAFT_03922 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_03922
MEFLDLGPFSRASGTVRLPGSKSISNRVLLLAALAEGETTITNLLDSDDTRVMLDALEKL
GVRLKRDGDTCVVTGTRGAFTARTADLFLGNAGTAVRPLTAALAVNGGDYRIHGVPRMHE
RPIGDLVDGLRQIGAKIDYEENEGFPPLRIRPAQISAEAPIRVRGDVSSQFLTSLLMTLP
LLRTESGVSTVQVDGELISKPYIDITIKLMARFGIEVERNGWHQFVVPAGQRYQSPGTIM
VEGDASSASYFLAAGALGGGPLKVEGVGRSSIQGDVGFADALIKMGANLQMGEDWIEVRG
VGHDSGKLEPIDTDFNLIPDAAMTIAVAALFADGTTTLRNIASWRVKETDRIAAMATELR
KVGAKVQEGEDFLVVTPPEKLIPNASIDTYDDHRMAMCFSLVSLGGVPVRINDPKCVGKT
FPDYFERFTALAQP