PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_03959 (459 amino acids)

SeqID: H281DRAFT_03959 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599679: |Glu-tRNA(Gln) amidotransferase subunit A|5013974 - 5015428]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_03959
MATEFTPFPPLAQLAADLAAGRTTSRALVETALERIADPAGQGAVAFMHVDADGARQAAD
AHDRLRAAGTVLSPLAGIPVSVKDLFDIEGQPTRAGSTVLADAPAATQDAVAVARLKRAG
AVIVGRTNMSEFAFSGLGLNPHYGNPLSPYRRDVKGDERISGGSSSGAAASVADGMAAVA
LGTDTGGSLRIPAALCGLTGFKPTAARVPKQGGVPLSPTLDSFGPIGVSVACCALVDRML
AGLEPRVPAARPLEGVRLGVLTNYVTDGVEPEVAAAVDTALKHLEAAGAIVSEVRFASLD
RLPDINRFGFSPIEAYAWHRPLLEKHREQYDPRVLVRILKGQPASAADYLDLLAERDAML
AEAARTLWQRFDAVVAPTVPMLPPRVAELVSDDDLFGRTNALMLRNPGVFNFLDACALSL
PCHLRGDAPVGLMLAGAPHADDALLAIGRGAEAVLNAIR