PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_04143 (416 amino acids)

SeqID: H281DRAFT_04143 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597276: kynureninase KynU[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_04143
MKHREEALALDSADPLATLRDQFALSATTIYLDGNSLGVPPAAAAQRAQTVIAAEWGEGL
IRSWNAAGWFALPRRLGNKLAPLIGAAENEVVVTDTISINLFKLLSAALRLANARDPKRR
VIVSERSNFPTDLYIAQGLIEQLDRGYDLRLVDDPSELPEAIGEDTAIAMITHVNYRTGY
MHDMAALTRLIHDKGALALWDLAHSAGAVPVDLNGVGADYAVGCTYKYLNGGPGSPAFVW
VPQRHQNDFAQPLSGWWGHRAPFKMDPAYQPDDGIGRFLCGTQPMVSMALVECGLDVFLQ
TDMQAIRRKSLALTDLFIELVETRCSEFPLKLVTPRAHSQRGSHASFEHPHGYEVMQALI
ARGVIGDYREPHVLRFGFTPLYTRFVDVWDAVETLREVLVRETWRAPEFAARGAVT

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory