PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_04152 (470 amino acids)

SeqID: H281DRAFT_04152 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 61252084: Polyol:NADP oxidoreductase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_04152
MSSGQDSGAAAHVILHIGAGSFHRAHQAWYLHRLNEANLPGEPHWSLTVGNIRSDMNAVL
EALAAQDGVYTLETVTPQGERAYETIRSIERVVPWTESLDALIEAGADPACKIISFTVTE
GGYYLDEHDQLDTANPDLSTDLKGGHTTIYGALAAILEARMKNGAGPVTLQTCDNLRRNG
ERFHAGMSAFLELRGAGELAQWFDDNTACPSSMVDRITPRPTPDVRERVKAATGVDDACP
VMGEAFIQWVIEERFIAGRPAWEKVGAELVDSVLPYEEAKIRILNATHSCIAWAGTLVGL
NYIHEGTQDADIRKFAFDYVTEDVIPCLSPSPLDLERYRDVVLERFGNPYIQDTNQRVAA
DGFSKLPGFIAPTLAECFERGVTPAATAMLPALFFRFLERWQAGTLPYTYQDGVMDERVA
RRFFAAPDPLQAFAADRLLWGSMAQTPELESALAGALARVDVWLAKRAHA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory