PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_04278 (641 amino acids)

SeqID: H281DRAFT_04278 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598390: phosphogluconate dehydratase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_04278
MVSPHSQLLKVTQRVVERSKPTREAYLARIHEAQGRFPARGALSCANLAHGFAGLEGNDK
LVIKQIREPNVGIVSSYNEMLSAHAPYKNYPDIIKQAARENGGVAQFAGGVPAMCDGITQ
GNAGMELSLFSREVIAMSTAVALTHNMFDAALCLGICDKIVPGLLIGALQFGHLPTIFVP
AGPMTSGLSNDDKAKTRQQFATGQCGRDALLEAEAAAYHGHGTCTFYGTANSNQMLMEIM
GLHLPGSAFVHPHTPLRDALTAQAARRVLDLTVERGHYMPIGHVIDEKAIVNGIVALLAT
GGSTNHTLHLVAIARAAGIVIDWDDFDTLSQAVPLLAKIYPNGKADVNHFHAAGGVAFLV
RNLLEGGLLHEDVNTVAGKGLHHYTEEPKLLDGKLQWVPGVQASEDTAVLRGIKEPFQAD
GGLRLMQGKLGRGVIKISAVAQQHRKVKAPAIVFDSQEAVQEAFDNGELKRDFIAVVRFQ
GARANGMPELHRLTPLLGVLQDQGFHVALVTDGRMSGASGKVPAVIHLSPEALLQGPIGK
VRSGDMLVIDAEAGVLDIEIDPAEWAARPNAVPLHQAENEVGFGRELFGVFRAAAAPAEQ
GASVFGPMVGERAASHGEHTAPAANHVGESGVTVASTTQAG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory