PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_04610 (1364 amino acids)

SeqID: H281DRAFT_04610 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600548: glycolate oxidase subunit GlcD[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_04610
MNAPQVFDPHGAAAAVVADPEARLREIPYNYTSFSDREIVIRLLGDDAWAALAELRAERR
TGRSARMLYEVLGDIWVVRRNPYLQDDLLDNPKRRAMLIEALHHRLSEIEKRRRADLTEH
GDEAGVDRAARVETLVQAARRAVDEFESEFQKTYDLRRRATKVLGRVTEKDNIKFDGLSR
VSHVTDATDWRVEYPFVVLTPDTEAEIAGMIKACFELGLTVIPRGGGTGYTGGAVPLTPF
SAVINTEKLEQLGAVEMTELPGVDRKVPTIFSGAGVVTRRVTEAAEQAGFVFAVDPTSLD
ASCVGGNVAMNAGGKKAVLWGTALDNLAWWRMVDPEGNWLEVTRLDHNLGKIHDIEVARF
ELKWFDGNHAPGEKLLRTESLDIKGRVFRKEGLGKDVTDKFLAGLPGVQKEGCDGLITSA
RWVLHKMPAHTRTVCLEFFGQAREAIPSIVEIKDYLFETSKQGGAILAGLEHLDERYLRA
VGYATKSKRNAFPKMVLIGDIVGNDADAVAQATSEVVRMANGKSGEGFVAVSAEARKRFW
LDRSRTAAIAKHTNAFKINEDVVIPLDRMGEYTDGIERINIELSIKNKLQLVDALEAFFQ
AGKLPLGKSDDANEIPSAELLEDRVQQALDLLKRVRTRWEFLRDKLDLSLREAQHYLVGL
GYEALAEKFADRVDAQTGATVFDVTQDRTIRVSWKQEIRAELRQIFNGGEFKPILDEAQA
IHKQVLRGRVFVALHMHAGDGNVHTNLPVNSDNYEMLQDAHTAVARIMKLARSLDGVISG
EHGIGITKLEFLTDDEIGEFRAYKQRVDPHGRFNAGKLLEGADLRNAYTPSFGLMGYESL
IMQQSDIGAISESIKDCLRCGKCKPVCATHVPRANLLYSPRNKILATSLLVEAFLYEEQT
RRGVSIKHWDEFNDVADHCTVCHKCVTPCPVKIDFGDVTMNMRNLLRKMGKKKFNPGNAA
GMFFLNATNPQTINLARTAMMGIGYKAQRLGNDVLKKFAKKQTAHPPATVGKPPVTQQVI
HFMNKKMPGNLPKKTARALLDIEDNKIVPIIRNPKTTTADTEAVFYFPGCGSERLFSQVG
LATQAMLWEAGVQTVLPPGYLCCGYPQRGSGQYDKAEQIVTDNRVLFHRVANTLNYLDIK
TVVVSCGTCYDQLAGYEFDKIFPGCRIIDIHEFLLEKGMKLDGVNGVRYMYHDPCHTPIK
TMDPVKLVNSLMGSEKDGYKIEKNDRCCGESGTLAVTRPDISTQVRFRKEEEIRKGAAKL
RGIPLLAEAGANAINPANASAGTAGAANGSVLKAGDGPQPKGATDVKILTSCPSCLQGLS
RYNEDAGIEADYIVVEMARHVLGEDWMVDYVQRANNGGIERVLV