PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_04625 (811 amino acids)

SeqID: H281DRAFT_04625 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598786: probable hydroxyacyl-CoA dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_04625
VSNLIIRKVAVLGAGVMGAQIAAHLINAKVPVLLFDLPAKEGPKNAIALKAIENLKKLSP
APFGVKDDAQYIQPANYDDDIEKLAECDLVIEAIAERMDWKHDLYKKVSPHIAPNAIFAT
NTSGLSITELSQGFADELKARFCGVHFFNPPRYMHLVELIPTATTRPEILDQLETFLTSV
VGKGVVRAKDTPNFIANRVGIFSILAVITEAAKFGLRFDEVDDLTGSRLGRAKSATFRTA
DVVGLDTMAHVIKTMQDNLKDDPFFPVYETPAVLAELVKKGALGQKTGGGFYRKEGKAIK
VLDPKTGDYVDGGAKADELVGRILKRPPAERLKLLRESQHPQAQFLWSIFRDVFHYIGVH
LESIADNARDVDLAIRWGFGWNEGPFEGWQTAGWKQVAEWVQEDIAAGKALSNVPLPSWV
LDGPVAEKGGVHTNEGSWSPASKTFVPRSSLGVYDRQVFRAPLVGETVADPKTYGKTLFE
TDAVRAWVDDRAGENDVLIVSFKSKMNTIGPSVIDGLTQAIELAEKEYKGLVVWQPTSLK
LGTPGGPFSAGANLEEAMPAFMMGGAKGIEPFVKKFQQGMLRVKYASVPVVSAVSGIALG
GGCELLLHSAKRVAHIESYIGLVEVGVGLVPAGGGLKEAALRAAEAATQVGATNDLLKFV
QKSFENAAMAKVSASALDARAMGYLKPSDTIVFNVFELLDVAKKEARALAGAGYRPPLRV
TQVPVAGRSAISTIKASLVNMRDGRFISEHDFVIASRIAEAVCGGDVEAGSFVDEEWLLQ
LERRAFVDLLGTQKTQERIMGMLQTGKPVRN

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory