PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_04741 (448 amino acids)

SeqID: H281DRAFT_04741 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_04741
MDTSTRQPNTVRSRLEIEPGYQSGFGNEFATEALPGALPEGRNSPQRAAYGLYAEQLSGT
AFTAPRGHNRRTWLYRIRPAAVHKPFTPLPSERLVANFAEVPPTPPNQLRWDALPMPGEP
TDFVDGWVTMAGNGAADSMSGCAIHLYAANRSMTDRFFYSADGELLIVPQEGRLDIATEL
GRLEVRPFEIAVIPRGVRFAVSLPDGTARGYICENFGALLRLPDLGPIGSNGLANPRDFL
TPHAAYEDREGDFELVAKMNGNLWRADIGHSPLDVVAWHGNYAPYKYDLRRFNTIGSISF
DHPDPSIFLVLQSQSDTPGVDSLDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGVY
DAKAEGFVPGGASLHNCMSGHGPDADTFEKASHSDTSKPVKVGDTMAFMFETRTLIKPTR
FALETAQLQAHYYECWQGLKKHFNPEQR