PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_04915 (368 amino acids)

SeqID: H281DRAFT_04915 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_04915
MTLHTAGPIAATVYRGDSVENTHRAHVAVVDSNGRLLYSFGDPSRVTLARSAAKPAQALA
VLETGALERFGFDDADLALMCASHSSEPRHIERARQMLAKAQASETDLRCGGHPPLSDAV
YVDWIKRDFKPGAVCSNCSGKHAGMLAGARSIGAALSGYEQPEHPLQIRVKHTVADVCDL
PDDGVQWATDGCNLPTPAFPLDRLARLFAKLAAAQDEVSSSGAAPNTRTAALARIYRAMT
AYPELVGGEGRFCTILMNAFGGALVGKLGADGSYGIGVRASNRTAAHTSKAGAQDAQGTQ
GALGIAVKIEDGNVGVLYAVVAEVLAQLDIGTAGQRAKLDSFHTPRMLNTMGVATGRRVF
SVALEASR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory