PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_04922 (663 amino acids)

SeqID: H281DRAFT_04922 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [18 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 20141321: Ferrichrome transport system permease protein fhuB]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_04922
MNRPTATVAFAAPRAWRLPALLLMLAAWLVYHTLSARLPVAQWPGVVLSGADATLQQLVV
RYGWLPRVAIALIAGAALSLAGVVFQQVLRNPLAEPLTLGVSAGAYLALTIAAVVAPALV
ADMRFTVALTGAALAMLATMAMTWRKGFAAVSIVLAGMIVNLYCGALSVLLTIVFERSLT
SVFIWGGGSLVQNGWAGVVWLLPRVLACGAAAALLVRPLTLFSLDDGSASQLGMSLAWTR
PVALAIAVILSAFVASAVGVIGFIGLGGPVLARLMGARRLRDQLLWAPLVGALLLAIADQ
AVQSLPGVLGELLPTGAAVALCGGPLLLWMLRRLHVEAPRPASAEHATPRRALRVPVLLL
GGLLVAAVVISLCFSVTMQGWQWTDAQHWSDVWFWRVPRLTASLGAGVMVALAGTILQRV
TGNPMASPDLLGVSGGAMLGMLVAAVVATEPSTPVLLAGSAAGALVCLLTIVTLGRRSGF
APEHVLLAGIAISAFAQAVIMLATASGGAYANLLRPLQYGSTYLIVPATAIAVGVCTVAA
VLVAYLGARWLEILPLGANVADALGVGAQRARLLLLAVAAILTAGATVVIGPMSFVGLMA
PHLARLLGFPRARSQMLVAALIGGLLMVLSDWLGRNMIFPQQMPAGVIATLLGGPYLMWL
LRR