PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_05400 (749 amino acids)

SeqID: H281DRAFT_05400 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118508: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.97
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_05400
MSQGLLDAQNGATSSPDASGKRGVSRRTFLKLSVTVGAAAGGGLLLGFSMPAVSQDQKAG
KSVIGGDANEAAQNGVFAPNAFIQIDTAGKVTLVIPKVEMGQGVYTSIPMLIAEELEVPL
DTVTLDHAPPDEKLFTDPLLGGQLTGGSTSIRYAWEPMRKAGATARMLLIGAAAQQWQVD
ASSCHAKSGQVIHAASNRSIGYGQLVDAAAKLPVPQNVPLKDPKDFKIIGTAVKRLDSPE
KVDGTATFGLDVRLPDMVYAAIANCPVFGGKLASVDDTNAKKIPGVRQVVKIDNAVAVIG
DHTWAAKRGLQALDIKWNEGADAKLSMKQIVDDLANASQRNGAVARKDGDVVHAFSNAKT
RVDAVYQQPFLAHATMEPINCTVHVRPDGCEIWLGSQVPTRVRDAAMAVTGLPADKIVVH
NHLIGGGFGRRLEFDMVTQAVKIGKQVSTPVKVLWTREEDIQHDMYRPYYYDKISAGLDA
NGKPLAWQHRIVGSSIMARFAPPAFKDGLDPDAVEVASDLPYDLPNQLVDYVRQEPHAIP
TAFWRGVGPTRGTFVVESFIDELAAEAKVDPVKYRRDLLGKTPRALNVLNTAAQAANWGS
AVPKGQGRGVSVMHAFGSYFAIVVDVAVDQGEVAVKRVVCAVDCGMVVNPNTVEAQVQGG
IIFGITAALYSEITIKDGRVEQNNFTDYRMLRIDETPPIDVHIVKSSEAPGGIGEPGTAA
LAPALTNAIFAATGKRLRQLPVGSQLKTA