PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_05493 (462 amino acids)

SeqID: H281DRAFT_05493 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 39932236: Taurine--pyruvate aminotransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_05493
MSIQTENLSDLARKDVQFHLHSQTNLPVHQHRGPLVMCRGDGICVYDETGKEYIESMSGL
WCAALGFSDRRLAAAATRQLETLPYYHTFNHRVPDVVARLAERVAAIVPLEDPKIFFASS
GSEANDTMTKIAWSYHRALGKPERRKMIAHKKGFHGSTVMGASLSGLPHMHAAFGLPVEG
ILHVECPHFYRNGRSNETEAEFVARLVAELEALIAREGAGTIAAFISEPILGAGGVIVPP
AGYFPAVQKVLRKHGILMLSDEIICGFGRTGDWFGAQGAGFVPDMMSCAKTLSSGYVPIS
AVVISGEIYSALQSESARSGPFGHGFTYSGHPVAAAVALEAVTIYQEMNAPERTQELGAY
LHDRLASLAGHPLVGEIRGRGLIAGIELVSDKDTRAPFRSEAHVGATVEARARAHGLILR
NMGDVIALSPPFIVTRDEIDLIVQKLTRALDEAGRSPQVDLN