PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_05541 (647 amino acids)

SeqID: H281DRAFT_05541 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [18 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_05541
MNDLFSNIATQDLHIAEAPAKVGGRVITSSAWGFGTLSTGGHLLATLCTFIERLCAVVLG
MDVLVVFVSVILRYFVHQPVDWAEEVARGLMIMMVFLGGATVLARRQHVNIDFFRALLPL
AWRAVALQIGYWVIAGTAGGLAYSAWLLLQDSANVTTPMGLPQWLNVLPVLLGALLMTVV
AVASAIAGAPRTIWLTLLACCIAAAALWGWNTEFEQYAVAPCAMLLAGFVGGLMVGVPIA
FVLALSALLYFISDPSLPMIVYSQQVMAGMDHFVLLAIPFFVLAGLVMEVNGMSSRLIEL
LVRIFGRVRGSMNLIAILATAFFSGVSGSKLADIAAVGGIVVPAVRRTKQDPNETAAVLA
ASGVMAETIPPCINMIIIGFVANISIGGLFLAGIVPAVVMAIALATLVVIFGKKIEPKTA
FESRRPICRLLGGALVALVMVIMIGKGVTSGVATSTEVSSFAVVYALVIGGFTFRELTPG
AIAALFVRAAAMAAGILFIIAAASSVAFALTILQIPAMLSAGMLALAHNYGSVAFLAVSV
LIMIVFGAILEGAPALIIFGPLLVPIAVHVGVNPLHFGTIAVTAMGLGLFSPPFGLGLCA
TCAMTGTRIEDVSRRMFKYLALLVVMLVLLVLVPSISLWLPRHFNMV