PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_05622 (442 amino acids)

SeqID: H281DRAFT_05622 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 62288063: D-amino acid dehydrogenase small subunit]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_05622
MKTIVLGGGVIGVATAFYLRQQGCEVTVIEREPDVALATSFGNAGVIAPGYVTPWAAPGM
PTKILKYLFKPASPLIFRPTLDPAQWRWIARWLRECDLERFRVNKQRMQRIAYYSRDCLH
EFRSRHPFDYGRSQGYLQLFRSEYDVELAQPALAVLRDAGIAYREVNPAQCVDIEPGLRW
ARATPVSGIHLPDDEAGDCARFTRELRAICERHGVQFRFDTRVTSIDVRGGAVRGVRVES
EAGGRPDGANGANGANGATGATGAAEIVQADSVVVALGVDSAALLAPLGVKVPLYPVKGY
SATLPVIDDEKAPRAALMDESLKTAITRFGNNLRVAGTAELGNRQTTLREQALQTLMKVL
DDWFPHAAAPTSAHFWVGRRPMTPDGAPLLGPSGIDNLWLNLGHGSTGWAMSMGSARVVA
DLITQRKPEIDLNGLTLARYGK