PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_05654 (356 amino acids)

SeqID: H281DRAFT_05654 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598361: histidinol-phosphate aminotransferase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_05654
MTTPQDIIRRDVLAMTSYPVADATGYIKLDAMENPFPLPPVLAAHLGEHLAGVALNRYPA
PRPEALIEKIKRVMGVPAGCDVLLGNGSDEIISMVSIACAKPGAKVLAPVPGFVMYQMSA
KLANLEFIGVPLNADFTLDTEAMLAAIAEHEPAVVYLAYPNNPTGTLFDDADMERIIAAA
TKSLVVIDEAYQPFAQRSWLPRADAFDNVVVMRTVSKLGLAGIRLGYLVGKPAWLTELDK
VRPPYNTNVLTQAAADFLLDHVDVLDSQAAQLRDERTKLAQAVAELPGAEVFPSAGNFLL
VRVPDASVLFETLLAARVLIKNVSKMHALLANCVRLTVGSPEENAQLIAALKLVLH