PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_05794 (550 amino acids)

SeqID: H281DRAFT_05794 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 416604: Alcohol dehydrogenase [acceptor]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_05794
MEYDYIIVGAGSGGCALASRLADDCPDATIALVEAGPHTNRNLLVNMPVGVAAVVPNKLK
TNYGYLTTPQPGLAGRQGYQPRGRGFGGSSAINAMIYTRGHPLDYDEWAESGCDGWSWHD
VLPYFRRAEGNERGADAWHGDSGPLTVSDLRYRNPFSRRFVQAAIEAGYKPNDDFNGPDQ
EGIGFYQVTQRDGRRCSVARAYVYDRERANLHTIADATVLRVVFEQKRACGVEIVRGGRR
EMLKARAEVVVAAGAFNSPQLLMCSGVGPAAHLQAHGIEVLHDAPEVGQNLIDHVDFTIN
KRVSSIEPTGFSVRGIGRMVPQFATFIRHGRGMLSSNVAEAGGFLKSKPTLERPDLQLHF
CAALVDDHNRHMHWGHGYSLHVCVLRPFSRGTVTLASADARAAPVIDPRFFSDSRDLDLL
VEGVQMARRILDAPSLALHGGRELYTRPGQTDAQLREAIARHADTIYHPVATCRMGGDAA
SVVDPQLRVRGVTGLRIVDASVMPTLIGGNTNAPTVMIGERAAELIAASRRKPHTVTIQA
PAMAPAGNAA