PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_05847 (1199 amino acids)

SeqID: H281DRAFT_05847 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_05847
MNAPLDAGQRASLEAALSSVTLDDKYTLERGRAYMSGIQALVRLPMLQQERDRAAGLNTA
GFISGYRGSPLGGLDQSLWKAKQHLASHQVVFQPGVNEDLAATAVWGSQQVNLYPSAKYD
GVFSMWYGKGPGVDRSGDVFKHGNSAGSSRHGGVLVLAGDDHAAKSSTLAHQSEHIFKAC
GLPVLFPSNVQEYLDFGLHGWAMSRYSGLWVAMKCVTDVVESSASVDIDPHRTQIILPED
FAMPEGGLNIRWPDPPLVQEARLLDYKWYAALAYVRANKLDRVEIDSPHARFGIMTGGKA
YLDVRQALTDLGLDDETCSRIGIRLYKVGCVWPLEAQGAQAFARGLDEILVVEEKRQILE
YAIKEELYNWPDAQRPRVFGKFDEKDGAGGEWSVPMGNWLLPAHYELSPAIIAKAIATRL
DKFDLPSDVRARIAARIAVIEAKEKALARPRVEVERKPWFCSGCPHNTSTNVPEGSRAMA
GIGCHYMTVWMDRSTSTFSQMGGEGVAWIGQAPFTNDKHVFANLGDGTYFHSGLLAIRAA
IASKANITYKLLYNDAVAMTGGQPVDGVLTVPQITHQLAAEGATKIAIVTDEPEKYSGNV
GLAPGIDIHHRDQLDEVQRQLREIPGTTILIYDQTCATEKRRRRKRGAYPDPARRVVINE
AVCEGCGDCSVKSNCLSVEPLDTEYGTKRQINQSTCNKDFSCVNGFCPSFVSVEGGQLRK
PKAASGIVADAMPPVPEPTLPSIARPYGVLVTGVGGTGVVTIGALLGMAAHLENKGVTVL
DVTGLAQKGGAVMSHVQIANNPGDIHATRIAMGEASLVIGCDAIVTASDECVSRMQAGRT
RVVLNSAHTPTAELIKNPNWRFPGSSTEADVRAGAGDECVDTVDANHFAVALLGDAIYTN
PFVLGYAWQRGWVPLTYQSLMRAIELNNVQVEKNRAAFEWGRRAAHDPVALRKYAQSQGQ
AGASDTPSGKIISLHTPKALDTLIDKRATYLAAWQNDAYADRYRALVSQVRVAESALDSI
DGQLPLTETVAKNLHKLMAYKDEYEVARLYSDPAFIEKLKASFEGDWKLHIHLAPPMFSK
KDAHGHLIKKKYGPWVFSAMHVLAKFKFLRGTALDVFGKTEERRTERALIGEYEALVREL
IGGLTVQNRDLAVELANLPDGIRGFGHIKENNLKGVRVKWNELLTRWRSPQAGTTQHAA