PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_06059 (396 amino acids)

SeqID: H281DRAFT_06059 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 61228131: Cystathionine beta-lyase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            6.49
    CytoplasmicMembrane    3.24
    OuterMembrane          0.14
    Extracellular          0.14
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_06059
MDDSLNFDTLAVRSGTVRSDFNEHSEAIFLTSSFVFASAADAAERFKNSEDYYTYSRFTN
PTVSMFQDRLAALEGGEACMATASGMAAIMSVVMSTLQAGDHLVSSQALFGSTLGMFSQI
FSKFGITTTFVDPTNLDAWKNAVRPETKMFFLETPSNPLTEVADIEAISKIAKAANALFV
VDNCFCSPALQQPLKLGADVVMHSATKFLDGQGRVLGGALVGSKKFIMEKVFPFVRSAGP
TLSAFNAWVLLKGMETLSLRVEKQSANALEIARWLDDHPSVKRVFYPGLESHPQHALAMR
QQKAGGAIVSFELKGDTPEQMRANAWRVIDSTKICSITGNLGDTRTTITHPATTTHGRVT
PEARAAAGITEGLIRLAVGLENAADIRADLERGLAG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory