PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_06067 (397 amino acids)

SeqID: H281DRAFT_06067 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595234: tryptophan synthase beta chain[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_06067
MYNLPDERGHFGQFGGVFVAETLVHALDELRAAYEKFQKDPEFVAEYERELKYFVGRPSP
IYHAQRWSELLGGAQIFLKREDLNHTGAHKINNVIGQALLAKRMGKPRVIAETGAGQHGV
ATATIAARFGMECVVYMGAEDVRRQAANVYRMKLLGASVVPVESGSRTLKDALNEAMRDW
VTNVENTFYIIGTVAGPHPYPMMVRDFQRVIGDECKVQMPELIGRQPDAVIACVGGGSNA
MGIFYPYIDDTAVELIGVEAAGDGIESGRHAASLIGGSPGVLHGNRTYLLQDENGQIIET
HSISAGLDYPGVGPEHAWLKEINRAQYVGITDEEALKAFHDCCRIEGIIPALESSHALAY
ATKLAPTLPKDKHLLVNLSGRGDKDMHTVAERSGIQF