PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_06296 (258 amino acids)

SeqID: H281DRAFT_06296 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 130017: Acetoacetyl-CoA reductase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            4.99
    CytoplasmicMembrane    4.90
    Extracellular          0.10
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_06296
MTRLAGKVALVTGAGRGIGAAIALAFAREGAAVALAELDIDTARQTAQQISSETGARVLA
VHTDVTQSASVQHAVSEAEKKLGPLDVLVNNAGINVFCDPLTMTDDDWRRCFAVDLDGVW
NGCRAVLPGMVERGAGSILNIASTHAFKIIPGCFPYPVAKHGVIGLTRALGIEYAPRNVR
VNAIAPGYIETQLTHDWWNEQPDPAAARQATMDLQPMKRIGRPEEVAMTAVFLASDEAPF
INATCITVDGGRSVLYHD

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory