PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_06482 (446 amino acids)

SeqID: H281DRAFT_06482 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596096: succinylarginine dihydrolase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_06482
MQATEANFDGLVGPTHNYAGLSFGNVASQNNEKSVANPKAAAKQGLRKMKQLADLGFHQG
VLPPQERPSMRLLRELGFSGDDATVIARVAKNAPELLAAASSASAMWTANAATVSPSADT
HDGRVHFTPANLCSKLHRAIEHESTRRTLRAIFSDADRFAVHEALPGTPALGDEGAANHT
RFCSEYGTRGVEFFVYGRSEYRRGPEPKRFPARQTFEASRAVAHRHGLLDEATVYAQQNP
EVIDAGVFHNDVIAVGNRNTLFCHELAFVEQNAVYDELRAKLAGLKAQFNVIEVPDAQVS
VADAVSSYLFNSQLLTRPDGKQVLVVPQECRENPRVAAYLDDLTSHTGPIDDVLVFDLRE
SMKNGGGPACLRLRVVLSDAERAAVTQGVWIDDTLFGRLDSWIEKHYRDRLAPADLTDPQ
LLVESRSALDELTQILGLGSLYDFQR