PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_06607 (483 amino acids)

SeqID: H281DRAFT_06607 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595989: propionate catabolic protein PrpD[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_06607
MSAPISNVRPDPDKVLVDIVDYVLDYQIDGTLALETARHCLIDTLGCGLEALTYPACTKL
LGPIVPGTIVPNGAKVPGTSFQLDPVQAAFNIGAMIRWLDFNDTWLAAEWGHPSDNLGGI
LATADWLSRTAIAAGKAPLAMKDVLIAMIKAHEIQGCIALENSFNKVGLDHVLLVKLAST
AVVGQMIGLTRDELINAVSQALVDGQALRTYRHAPNTGSRKSWAAGDATSRAVRLALISK
TGEMGYPSVLTAKTWGFYDVLFKGNEFKFQRPYGSYVMENVLFKISFPAEFHAQTAVEAA
MSLHAQLQLQGRRVEDIRKITIRTHEAALRIIDKKGPLDNPADRDHCIQYMIAVPLIFGR
LTAADYEDAVAQDPRIDVLRAKMACVEDPQFTKDYHDPEKRSIANALTIEFNDGSQFDEV
VVEYPIGHKRRREDGIPLLVEKFKTNLARRFPVKQQLAILDVSLDQARLEAMPVNEYVDL
YVI