PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS00095 (539 amino acids)

SeqID: HSERO_RS00095 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597595: pyoverdine synthetase D [Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS00095
ISAAHYRAGNPSPYEWQIPTHFNIAQAACDRWADGSGRTAIICEDADGSVTSYSYDQLKI
LSDRFANALRAAGVGRGDRIGIYLSQRIETVITHLAAYKLGAITVPLFYLFGPDAIAYRL
DNSGAVALVTDASGMEKATLAGELPALRLVFCVESSDLVLPQTTDFWDRLHAAPAELDPV
LTLADDPAMIIYTSGTTGKAKGALHAHRVLLGHLPGVEVSHDSFPQEGDRFWTPADWAWI
GGLLDVLLPSLYHGVAVVARRLEKFDAAEVFGLLARHQIRNVFFPPTALKMLRGAATVRA
QADFSLRSVASGGETLGDDLIAWGREALGVTINEFYGQTECNLVVSSSSHCYPSVSGSMG
RAVPGHVVQIVDEQGQVLPHGTVGNIAIRAPDPVMFLRYWRNEEATREKFAGDFLLTGDL
GSMDEQGYIRYLGRNDDVITSAGYRIGPAAIEECLMRHPAVRIAAVVGVKDALRTEVVKA
FVVLKDGVTPDEALKAELQQHVRAQLAAHEYPRLISFVAALPTTATGKIMRKTLKEMDQ

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory