PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS05090 (501 amino acids)

SeqID: HSERO_RS05090 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 7404442: Ribose import ATP-binding protein rbsA]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Cytoplasmic            0.01
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS05090
LQGIHKRFAGVHALRGVDLTIHAGEIYHLLGENGCGKSTLIKIIAGAQPPSEGEIYIQGQ
RVAELTPLASLSLGIETVYQDLSLLPNMSVAENVALSEQLVHHQGRLARLFDRHALNQTA
ARALRAVNLPADADFLDTRVDELPIATRQLIAIARAIATSARMVIMDEPTTSLTQKEVDA
LVKVINGLRANGVAVLFVSHKLDECFAIGGQAIVFRDGEKVAQGPIQQFTKAQLGQLMTG
KQLSQERYRVDAQLHKPLMEVRALGRHGAFEDVSFALRQGEILGITGLLDSGRNELALAL
AGVEPARAGQITLEGQPLSLRNPGDAITHGIGYVPEDRISEGLFLDKSIRDNIVTTILRK
LRGKFGALDAAACQRFSTDTVRQLQIATPDVDRPVQSLSGGNQQRVLIGRWLAINPRVLI
LHGPTVGVDVGSKDIIYRIIQDLAQRGLGVILISDDLPELLQNCDNLLLMKRGRIVRRYA
VEGLAESELFHDLVSEQSQES

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory