PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS05120 (343 amino acids)

SeqID: HSERO_RS05120 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16132198: 2-deoxyribose-5-phosphate aldolase, NAD(P)-linked [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS05120
MNMTRKTPSLRSAQGEADVAQPDSAPTGHPRNSVQAYDAAAFEHLRINLSAAEKRVATLK
GRRSVKKDAQAAWLLKAITCIDLTTLSGDDTPQRVRRLCAKAANPLRADLLEALGMQDRG
LTTGAVCVYHRFVKTAVDALEGKGIPVAAVSTGFPAGLNPHALKLKEIEASVRDGAAEID
IVITREHVLTGNWEALYREMRDFRQACGEAHVKAILATGELKTLRNVAKASMVCMMAGAD
FIKTSTGKESVNATPLVSLVMLRMIRQYQEMTGIKVGYKPAGGVATAKDVLEYQVLMKEE
LGHDWLQPDLFRVGASSLLADIERQLEHHVTGRYSAFNRHAIG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory